ATAC Seq

ATAC Seq is a Data skill for Claude Code, published by BioTender-max in awesome-bio-agent-skills.

174 stars30 forkson BioTender-max/awesome-bio-agent-skillsAdded 2026/09/07+1% in starsRepository updated 2026/07/01

agent-skillsai-agentai-agentsawesomeawesome-listbioinformaticsbiomedicalclaudeclaude-codeclaude-skillscomputational-biologydrug-discoverygenomicsllmmcpprotein-designproteomicssingle-cellskillstranscriptomics

Install in seconds

Install ATAC Seq

Copy ATAC Seq into your Claude Code skills folder. Run the command in your terminal, or review the source on GitHub before installing.

terminal

npx degit https://github.com/BioTender-max/awesome-bio-agent-skills/tree/main/skills/bioclaw/atac-seq ~/.claude/skills/atac-seq

Requires Node.js. Downloads this skill only — not the rest of the repository — into your Claude Code skills folder.

Without Node.js

git clone https://github.com/BioTender-max/awesome-bio-agent-skills.git

Clones the whole repository, then copy the skill’s own directory into your skills folder yourself.

In this catalog

Source file: skills/bioclaw/atac-seq/SKILL.md in BioTender-max/awesome-bio-agent-skills
Installs to: ~/.claude/skills/atac-seq
Collection: One of 25 skills cataloged from this repository
Category: Data — 796 skills

What ATAC Seq does

ATAC Seq processes bulk ATAC-seq data with QC, MACS3 peak calling, consensus peak matrices, differential accessibility, and motif or footprint follow-up. Use it for paired-end ATAC analyses that need assay validation and downstream accessibility summaries.

ATAC Seq is cataloged under Data on DirSkills. ATAC Seq comes from a repository tagged agent-skills, ai-agent, ai-agents, awesome and awesome-list.

Documentation

README

Excerpt

ATAC Seq

Version Compatibility

Reference examples assume:

macs3 3.0+
samtools 1.18+
deepTools 3.5+

Verify the runtime first:

CLI: macs3 --version, samtools --version, bamCoverage --version

Overview

Use this skill when the user needs:

bulk ATAC-seq QC
peak calling
accessibility counting
differential accessibility
motif deviation or footprint follow-up

When To Use This Skill

the task is bulk ATAC-seq rather than ChIP-seq
TSS enrichment, fragment periodicity, or FRiP need review
the output should include peaks, counts, and downstream accessibility summaries

Quick Route

This is the opening of the README. Read the full README on GitHub.

Frequently asked about ATAC Seq

What else does BioTender-max publish alongside ATAC Seq?
ATAC Seq is one of 25 skills that DirSkills catalogs from BioTender-max/awesome-bio-agent-skills, the repository it ships in. Its siblings there include AlphaFold, BindCraft Binder Design and Binder Design. Each one is a separate skill with its own page in this directory, installs the same way ATAC Seq does, and is maintained by BioTender-max in that same repository. The rest of the collection is listed on the BioTender-max/awesome-bio-agent-skills page.
How does ATAC Seq compare to other Data skills?
ATAC Seq ranks #745 by stars among the 796 Data skills in this catalog. The most-starred ones next to it are Benchmark Methodology, Jupyter Notebook and Solana. DirSkills ranks by the star count of the repository each skill ships in, so that order reflects how popular those repositories are rather than any review of ATAC Seq against them. Open each page to compare what they document and how they install.