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AI EngineeringPython

Lit-Dedup

by kennethkhoocy

Lit-Dedup is an AI Engineering skill for Claude Code, published by kennethkhoocy in applied-micro-skills.

48 stars0 forkson kennethkhoocy/applied-micro-skillsAdded 2026/08/11Repository updated 2026/07/22
applied-microeconomicsclaude-codeclaude-skillscodexcodex-skillsempirical-research
Install in seconds
Install Lit-Dedup
Copy Lit-Dedup into your Claude Code skills folder. Run the command in your terminal, or review the source on GitHub before installing.
terminal
npx degit https://github.com/kennethkhoocy/applied-micro-skills/tree/main/plugins/applied-micro/skills/lit-review-orchestrator/lit-dedup ~/.claude/skills/lit-dedup

Requires Node.js. Downloads this skill only — not the rest of the repository — into your Claude Code skills folder.

Without Node.js

git clone https://github.com/kennethkhoocy/applied-micro-skills.git

Clones the whole repository, then copy the skill’s own directory into your skills folder yourself.

In this catalog

Source file
plugins/applied-micro/skills/lit-review-orchestrator/lit-dedup/SKILL.md in kennethkhoocy/applied-micro-skills
Installs to
~/.claude/skills/lit-dedup
Collection
One of 25 skills cataloged from this repository
Category
AI Engineering2451 skills

What Lit-Dedup does

Merge and deduplicate papers from literature review pipeline stages using exact DOI matching and LLM fuzzy matching. Produces a master list with provenance tracking for research workflows.

Lit-Dedup is cataloged under AI Engineering on DirSkills. Lit-Dedup comes from a repository tagged applied-microeconomics, claude-code, claude-skills, codex and codex-skills.

Documentation

README

Lit-Dedup (Stage 5 — Merge & Deduplicate)

Merge multiple pipeline stage outputs into one deduplicated master list with provenance tracking.

Input: one or more JSON files from Stages 1–4 Output: merged_results.json + merged_results.ris + dedup_log.json

Quick Start

# Merge all JSON files in a directory
python scripts/lit_dedup.py --input-dir ./results/ -o merged_results.json

# Merge specific files
python scripts/lit_dedup.py --inputs stage1.json stage2.json stage4.json -o merged.json

# DOI-only dedup (skip LLM pass)
python scripts/lit_dedup.py --inputs *.json --no-llm -o merged.json

# Non-interactive (skip confirmation)
python scripts/lit_dedup.py --inputs *.json -o merged.json --yes

This is the opening of the README. Read the full README on GitHub.

Frequently asked about Lit-Dedup

  • What else does kennethkhoocy publish alongside Lit-Dedup?

    Lit-Dedup is one of 25 skills that DirSkills catalogs from kennethkhoocy/applied-micro-skills, the repository it ships in. Its siblings there include Adversarial Empirical Review, Annotator Input Parity Check and AsyncOpenAI Concurrency Fix. Each one is a separate skill with its own page in this directory, installs the same way Lit-Dedup does, and is maintained by kennethkhoocy in that same repository. The rest of the collection is listed on the kennethkhoocy/applied-micro-skills page.

  • How does Lit-Dedup compare to other AI Engineering skills?

    Lit-Dedup ranks #2280 by stars among the 2451 AI Engineering skills in this catalog. The most-starred ones next to it are Architecture Decision Records, AI-First Engineering and Agentic OS. DirSkills ranks by the star count of the repository each skill ships in, so that order reflects how popular those repositories are rather than any review of Lit-Dedup against them. Open each page to compare what they document and how they install.

More from kennethkhoocy/applied-micro-skills

Lit-Dedup is one of 25 skills cataloged on DirSkills from kennethkhoocy/applied-micro-skills.

See all 25 skills
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3w ago

Adversarial Empirical Review

Automates verification that empirical research tables are correct by comparing them against the underlying data and analysis code through an adversarial, regression-gated review pipeline. Use when you need to audit whether numbers in LaTeX tables match computed results.
Quality
480
🔍
3w ago

Annotator Input Parity Check

Audit the annotation protocol to ensure the model receives the same input as human annotators, preventing recall ceilings and misdiagnosed failures. Use before designing any label-replication model, or when a validation report shows low recall on label subsets.
AI Engineering
480
🚀
3w ago

AsyncOpenAI Concurrency Fix

Fixes a silent throughput ceiling in asyncio LLM batch pipelines by overriding the default httpx connection pool limit to match the desired concurrency. Use when raising the asyncio semaphore above ~100 produces no gain.
AI Engineering
480
✍️
3w ago

Cite Placement

Unified router for placing pre-screened citations into manuscripts or restyling existing citations. Supports inline, footnote placement, and full style conversion for LaTeX and Word documents.
Writing
480
🔍
3w ago

DeepResearch Search

Runs a deep literature search using Google Gemini's Deep Research agent via API, parses the cited report into structured data for a literature review pipeline. Use only when explicitly requested as an API-driven alternative to browser-based deep searches.
Automation
480
📄
3w ago

Download Gated PDFs

Downloads the actual PDF from bot-gated websites (e.g., taxpolicycenter.org, SSRN mirrors) that return HTML instead of PDFs. Uses the Wayback Machine's raw-content (id_) URL to obtain the original binary, bypassing bot challenges.
Automation
480