Browse Skills

Astropy provides core Python functionality for astronomy and astrophysics workflows, including units, coordinates, FITS I/O, tables, time, WCS, and cosmology. Use when implementing or debugging astronomical data analysis code with Astropy.

BGPT Paper Search retrieves structured experimental data from scientific papers via the BGPT MCP server. Use it for literature reviews, evidence synthesis, or finding methods, results, sample sizes, and quality scores not available in abstracts alone.

BIDS helps organize, query, validate, and convert neuroscience datasets (MRI, EEG, MEG, PET, microscopy, behavioral) into the Brain Imaging Data Structure standard. Use it when preparing or sharing datasets for repositories like OpenNeuro and DANDI.

Biopython provides tools for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access via Bio.Entrez. Use it for batch processing, custom bioinformatics pipelines, and BLAST automation.

BioServices provides a unified Python interface to 40+ bioinformatics web services for retrieving protein, pathway, compound, and sequence data. Use it when queries span multiple databases like UniProt, KEGG, ChEMBL, or Reactome and require consistent cross-database ID mapping.

Bulk RNA-seq takes raw FASTQ reads through QC, trimming, alignment, quantification, and differential expression, then hands off to pathway enrichment and publication figures. Use it when you need a reproducible, end-to-end bulk RNA-seq differential-expression workflow.

Cellxgene Census queries the CZ CELLxGENE Census programmatically for versioned single-cell and spatial transcriptomics data, including metadata, gene expression, summary counts, embeddings, and source H5AD files. Use it for large-scale bioinformatics analyses, machine learning on cell data, or cross-dataset comparisons.

Cirq designs, simulates, and runs quantum circuits on quantum computers and simulators. Use it for Google Quantum AI hardware, noise modeling, and quantum characterization experiments.

Citation Management finds, validates, and formats academic citations across OpenAlex, PubMed, and Google Scholar. Use it to convert DOIs/PMIDs to BibTeX, verify metadata, deduplicate references, and produce clean bibliographies for scientific writing.

Clinical Reports creates safety-bounded draft structures and runs local deterministic checks for clinical case, diagnostic, trial, safety, and aggregate research reports. Use it only with synthetic, de-identified, or aggregate inputs and verified source-fact manifests; every output requires qualified review.

COBRApy performs constraint-based metabolic modeling for systems biology, including FBA, FVA, gene knockouts, flux sampling, and SBML model handling. Use it when working with genome-scale metabolic models to simulate and optimize cellular metabolism or design metabolic engineering experiments.

Jobdanmark Search queries live job listings from Jobdanmark.dk's public API, covering 15,000+ active jobs across 10 categories and all Danish municipalities. Use it to search by keyword, location, category, or job type and fetch full posting details.