Browse Skills

Autoskill observes the user's local screenpipe timeline to detect repeated research workflows, matches them against existing skills, and drafts new skill proposals or composition recipes for uncovered patterns. Use it when the user explicitly asks to analyze recent work and propose skills based on what they actually do.

Benchling Integration enables programmatic access to Benchling's registry entities, inventory, notebook entries, workflows, and Data Warehouse through the Python SDK and REST API. Use it when automating life sciences R&D data or syncing Benchling with external systems.

BGPT Paper Search retrieves structured experimental data from scientific papers via the BGPT MCP server. Use it for literature reviews, evidence synthesis, or finding methods, results, sample sizes, and quality scores not available in abstracts alone.

BIDS helps organize, query, validate, and convert neuroscience datasets (MRI, EEG, MEG, PET, microscopy, behavioral) into the Brain Imaging Data Structure standard. Use it when preparing or sharing datasets for repositories like OpenNeuro and DANDI.

Biopython provides tools for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access via Bio.Entrez. Use it for batch processing, custom bioinformatics pipelines, and BLAST automation.

BioServices provides a unified Python interface to 40+ bioinformatics web services for retrieving protein, pathway, compound, and sequence data. Use it when queries span multiple databases like UniProt, KEGG, ChEMBL, or Reactome and require consistent cross-database ID mapping.

Bulk RNA-seq takes raw FASTQ reads through QC, trimming, alignment, quantification, and differential expression, then hands off to pathway enrichment and publication figures. Use it when you need a reproducible, end-to-end bulk RNA-seq differential-expression workflow.

Cellxgene Census queries the CZ CELLxGENE Census programmatically for versioned single-cell and spatial transcriptomics data, including metadata, gene expression, summary counts, embeddings, and source H5AD files. Use it for large-scale bioinformatics analyses, machine learning on cell data, or cross-dataset comparisons.

Cirq designs, simulates, and runs quantum circuits on quantum computers and simulators. Use it for Google Quantum AI hardware, noise modeling, and quantum characterization experiments.

Citation Management finds, validates, and formats academic citations across OpenAlex, PubMed, and Google Scholar. Use it to convert DOIs/PMIDs to BibTeX, verify metadata, deduplicate references, and produce clean bibliographies for scientific writing.

Clinical Decision Support Research prepares and validates research-only clinical decision-support evaluation, evidence-profile, cohort, survival, biomarker/model, privacy, and governance artifacts. Use it for aggregate or synthetic research documentation and traceability—not patient care or live clinical operation.

Clinical Reports creates safety-bounded draft structures and runs local deterministic checks for clinical case, diagnostic, trial, safety, and aggregate research reports. Use it only with synthetic, de-identified, or aggregate inputs and verified source-fact manifests; every output requires qualified review.