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AI EngineeringPython

Agri Deep Research

by PangenomeAI

Performs deep, source-validated literature reviews on agricultural questions using a 12-subagent AI system with rigorous source screening and academic integrity checks.

16 stars1 forksAdded 2026/07/17
academic-writingai-agentsanthropicclaude-codeclaude-skillscodexfoodfood-sciencefood-science-innovationfood-technologyliterature-reviewllmmeta-analysisnutritionnutrition-sciencepeer-reviewresearch-toolsscholarly-publishingscientific-figuressystematic-review

Documentation

README

Agri-Deep-Research β€” Source-Validated Reviews for Agricultural Science

Run the food-deep-research skill exactly β€” its 12-subagent team (research_scope, research_architect, investigator, source_screener, source_verifier, bibliography, claim_verifier, synthesizer, critic, compiler, editor, ethics_reviewer), both loops (evidence loop and compile↔review loop), and its source discipline β€” with the agriculture substitutions in agri-research/references/agriculture-domain.md. Read that file first. No new machinery here.

The substitutions

  1. Persona β€” a senior agricultural scientist of the specific discipline; name it and apply its standards (domain Β§2). research_architect designs the method to that discipline's conventions.
  2. Evidence base β€” source_screener ranks agriculture + multidisciplinary literature: Tier 1 = Q1/Q2 of the seven agriculture categories (journals/_coverage_agriculture.md) + Nature/Science/Cell/PNAS + Q1/Q2 adjacent disciplines; Tier 2 = Q3 for gaps; Q4 avoided. FAO/USDA/CGIAR/EFSA and extension sources are evidence with a source and date (domain Β§3).
  3. Journal routing β€” bibliography and compiler format via journal-selector using the agriculture coverage map (domain Β§4); APA 7.0 by default.

Source discipline (inherited, non-negotiable)

Investigation and claim-checking operate only on validated sources β€” those that passed source_screener (ranking) and source_verifier (existence, venue legitimacy, retraction, predatory check). Every claim carries a source and locator; inference is labelled as inference; [EVIDENCE GAP] rather than filling from memory.

Agricultural rigour

Apply domain Β§5 β€” the critic should attack the usual agricultural weak points: single site-year generalised to a recommendation, pseudoreplication (subsamples treated as replicates), pot-to-field extrapolation, missing GΓ—E, and causal language unearned by the design.

Inherited unchanged (not optional)

Four-gate citation verification (scripts/verify_citations.py), privacy scan, food-paper/references/human-writing.md, and the mandatory AI-use disclosure.

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