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AI EngineeringPython

Agri-Review

by PangenomeAI

Multi-reviewer peer-review system for agricultural manuscripts. Simulates an editorial panel of domain reviewers and a formatting check against the target journal.

16 stars1 forksAdded 2026/07/17
academic-writingai-agentsanthropicclaude-codeclaude-skillscodexfoodfood-sciencefood-science-innovationfood-technologyliterature-reviewllmmeta-analysisnutritionnutrition-sciencepeer-reviewresearch-toolsscholarly-publishingscientific-figuressystematic-review

Documentation

README

Agri-Review โ€” Peer-Review Panel for Agricultural Science

Run the food-review skill exactly โ€” its panel (review_coordinator, knowledge_builder, reviewer_methodology, reviewer_domain, reviewer_integrity, devils_advocate, format_checker), its modes (full ยท quick ยท methodology ยท re-review), and its report format โ€” with the agriculture substitutions in agri-research/references/agriculture-domain.md. Read that file first. No new machinery here.

The substitutions

  1. Persona โ€” every reviewer is a senior agricultural scientist of the specific discipline (agronomy ยท soil science ยท horticulture ยท dairy & animal science ยท agricultural engineering ยท agricultural economics & policy). Name the discipline; a soil-carbon paper gets a soil scientist's standards (domain ยง2).
  2. Knowledge base โ€” knowledge_builder runs first, unchanged in method: Pathway A reads the manuscript's cited sources in full and audits whether each supports its claim; Pathway B reads the field's key literature, ranked as Tier 1 Q1/Q2 agriculture (journals/_coverage_agriculture.md)
    • Nature/Science/Cell/PNAS + Q1/Q2 adjacent disciplines, Q4 avoided. Pathway B may use agri-research's full review branch for discovery/screening โ€” knowledge extraction only, no literature-review article (domain ยง3). Inside agri-pipeline with a Stage-1 evidence base: reuse it and top up with agri-research quick brief key reviews, exactly as food-review does.
  3. Journal routing โ€” format_checker audits against the journal resolved once by journal-selector from the agriculture coverage map (domain ยง4); APA 7.0 default.

What an agricultural reviewer checks first (domain ยง5)

  • The experimental unit / pseudoreplication โ€” subsamples counted as replicates, plants scored as units within one plot, animals within one pen. The single most common fatal flaw; raise it as Critical when present.
  • Field-trial reporting โ€” site, season(s)/years, soil classification, cultivar, plot size, design, replication, management, statistical model.
  • Generalisation โ€” one site-year, one region, or a pot/glasshouse study presented as a general agronomic recommendation; missing Gร—E.
  • Animal work โ€” ethics approval and ARRIVE; diet composition; unit (pen vs animal).
  • Soil work โ€” sampling depth, bulk density, equivalent-soil-mass basis for stock claims.
  • Economics/policy โ€” identification strategy; causal language unearned by design.

Inherited unchanged (not optional)

The report format (food-review/references/report-format.md: Parts A/B/C, stable issue IDs, Response (type) taxonomy, editorial decision โ€” Accept ยท Minor Revision ยท Major Revision ยท Reject with the decisive reasons) and its Word (.docx) deliverable rule โ€” never Markdown; inside agri-pipeline this is the single Review & Response Report that agri-paper later fills responses into, so no separate reviewer report or response letter is created. Also inherited: editor-query comments placed in the manuscript for fixes needing the author's data (word-review-comments.md), the AI-writing-tell check (human-writing.md), the privacy scan, and the rule that a source never retrieved is marked, not summarized.

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