Documentation
README
name: bio-alignment-files-bam-statistics description: Generate alignment statistics using samtools flagstat, stats, depth, and coverage. Use when assessing alignment quality, calculating coverage, or generating QC reports. tool_type: cli primary_tool: samtools measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools:
- read_file
- run_shell_command
BAM Statistics
This is the opening of the README. Read the full README on GitHub.