๐Ÿ“Š
DataPython

BAM Statistics

by FreedomIntelligence

BAM Statistics is a Data skill for Claude Code, published by FreedomIntelligence in OpenClaw-Medical-Skills.

2.9K stars410 forkson FreedomIntelligence/OpenClaw-Medical-SkillsAdded 2026/08/17Repository updated 2026/07/21
awesomeclaude-codeclawhubmedicalnanoclawopenclawopenclaw-skillsskills
Install in seconds
Install BAM Statistics
Copy BAM Statistics into your Claude Code skills folder. Run the command in your terminal, or review the source on GitHub before installing.
terminal
npx degit https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-alignment-files-bam-statistics ~/.claude/skills/bio-alignment-files-bam-statistics

Requires Node.js. Downloads this skill only โ€” not the rest of the repository โ€” into your Claude Code skills folder.

Without Node.js

git clone https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git

Clones the whole repository, then copy the skillโ€™s own directory into your skills folder yourself.

In this catalog

Source file
skills/bio-alignment-files-bam-statistics/SKILL.md in FreedomIntelligence/OpenClaw-Medical-Skills
Installs to
~/.claude/skills/bio-alignment-files-bam-statistics
Collection
One of 25 skills cataloged from this repository
Category
Data โ€” 668 skills

What BAM Statistics does

BAM Statistics generates alignment statistics from BAM files using samtools and pysam. Use it when assessing alignment quality, calculating coverage, or generating QC reports.

BAM Statistics is cataloged under Data on DirSkills. BAM Statistics comes from a repository tagged awesome, claude-code, clawhub, medical and nanoclaw.

Documentation

README


name: bio-alignment-files-bam-statistics description: Generate alignment statistics using samtools flagstat, stats, depth, and coverage. Use when assessing alignment quality, calculating coverage, or generating QC reports. tool_type: cli primary_tool: samtools measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools:

  • read_file
  • run_shell_command

BAM Statistics

This is the opening of the README. Read the full README on GitHub.

Frequently asked about BAM Statistics

  • What else does FreedomIntelligence publish alongside BAM Statistics?

    BAM Statistics is one of 25 skills that DirSkills catalogs from FreedomIntelligence/OpenClaw-Medical-Skills, the repository it ships in. Its siblings there include AAV Vector Design Agent, ADHD Daily Planner and ADMET Prediction. Each one is a separate skill with its own page in this directory, installs the same way BAM Statistics does, and is maintained by FreedomIntelligence in that same repository. The rest of the collection is listed on the FreedomIntelligence/OpenClaw-Medical-Skills page.

  • How does BAM Statistics compare to other Data skills?

    BAM Statistics ranks #264 by stars among the 668 Data skills in this catalog. The most-starred ones next to it are Benchmark Methodology, Jupyter Notebook and Solana. DirSkills ranks by the star count of the repository each skill ships in, so that order reflects how popular those repositories are rather than any review of BAM Statistics against them. Open each page to compare what they document and how they install.

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