Bio Alignment Filtering

by FreedomIntelligence

Bio Alignment Filtering is a Data skill for Claude Code, published by FreedomIntelligence in OpenClaw-Medical-Skills.

2.9K stars410 forkson FreedomIntelligence/OpenClaw-Medical-SkillsAdded 2026/08/17Repository updated 2026/07/21

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Install in seconds

Install Bio Alignment Filtering

Copy Bio Alignment Filtering into your Claude Code skills folder. Run the command in your terminal, or review the source on GitHub before installing.

terminal

npx degit https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-alignment-filtering ~/.claude/skills/bio-alignment-filtering

Requires Node.js. Downloads this skill only — not the rest of the repository — into your Claude Code skills folder.

Without Node.js

git clone https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git

Clones the whole repository, then copy the skill’s own directory into your skills folder yourself.

In this catalog

Source file: skills/bio-alignment-filtering/SKILL.md in FreedomIntelligence/OpenClaw-Medical-Skills
Installs to: ~/.claude/skills/bio-alignment-filtering
Collection: One of 25 skills cataloged from this repository
Category: Data — 668 skills

What Bio Alignment Filtering does

Bio Alignment Filtering filters SAM/BAM alignments by flags, mapping quality, and genomic regions using samtools and pysam. Use it to extract specific reads, remove low-quality or duplicate alignments, or subset to target regions.

Bio Alignment Filtering is cataloged under Data on DirSkills. Bio Alignment Filtering comes from a repository tagged awesome, claude-code, clawhub, medical and nanoclaw.

Documentation

README

Excerpt

name: bio-alignment-filtering description: Filter alignments by flags, mapping quality, and regions using samtools view and pysam. Use when extracting specific reads, removing low-quality alignments, or subsetting to target regions. tool_type: cli primary_tool: samtools measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools:

read_file
run_shell_command

Alignment Filtering

This is the opening of the README. Read the full README on GitHub.

Frequently asked about Bio Alignment Filtering

What else does FreedomIntelligence publish alongside Bio Alignment Filtering?
Bio Alignment Filtering is one of 25 skills that DirSkills catalogs from FreedomIntelligence/OpenClaw-Medical-Skills, the repository it ships in. Its siblings there include AAV Vector Design Agent, ADHD Daily Planner and ADMET Prediction. Each one is a separate skill with its own page in this directory, installs the same way Bio Alignment Filtering does, and is maintained by FreedomIntelligence in that same repository. The rest of the collection is listed on the FreedomIntelligence/OpenClaw-Medical-Skills page.
How does Bio Alignment Filtering compare to other Data skills?
Bio Alignment Filtering ranks #268 by stars among the 668 Data skills in this catalog. The most-starred ones next to it are Benchmark Methodology, Jupyter Notebook and Solana. DirSkills ranks by the star count of the repository each skill ships in, so that order reflects how popular those repositories are rather than any review of Bio Alignment Filtering against them. Open each page to compare what they document and how they install.