Bio Dataset Search

Bio Dataset Search is a Data skill for Claude Code, published by BioTender-max in awesome-bio-agent-skills.

174 stars30 forkson BioTender-max/awesome-bio-agent-skillsAdded 2026/09/07+1% in starsRepository updated 2026/07/01

agent-skillsai-agentai-agentsawesomeawesome-listbioinformaticsbiomedicalclaudeclaude-codeclaude-skillscomputational-biologydrug-discoverygenomicsllmmcpprotein-designproteomicssingle-cellskillstranscriptomics

Install in seconds

Install Bio Dataset Search

Copy Bio Dataset Search into your Claude Code skills folder. Run the command in your terminal, or review the source on GitHub before installing.

terminal

npx degit https://github.com/BioTender-max/awesome-bio-agent-skills/tree/main/skills/bioclaw/bio-dataset-search ~/.claude/skills/bio-dataset-search

Requires Node.js. Downloads this skill only — not the rest of the repository — into your Claude Code skills folder.

Without Node.js

git clone https://github.com/BioTender-max/awesome-bio-agent-skills.git

Clones the whole repository, then copy the skill’s own directory into your skills folder yourself.

In this catalog

Source file: skills/bioclaw/bio-dataset-search/SKILL.md in BioTender-max/awesome-bio-agent-skills
Installs to: ~/.claude/skills/bio-dataset-search
Collection: One of 25 skills cataloged from this repository
Category: Data — 796 skills

What Bio Dataset Search does

Bio Dataset Search finds suitable biomedical datasets for a research topic and maps them to defined tasks. Use it to extract datasets from papers, search public repositories, and normalize metadata for benchmark planning.

Bio Dataset Search is cataloged under Data on DirSkills. Bio Dataset Search comes from a repository tagged agent-skills, ai-agent, ai-agents, awesome and awesome-list.

Documentation

README

Excerpt

bio-dataset-search

Step 3: Dataset search and task matching (数据集搜索与匹配)

Find suitable datasets for each task and map datasets to the task system defined earlier in the manuscript pipeline.

Purpose

Extract datasets from related papers when possible
Search public repositories directly when needed
Normalize dataset metadata into a common structure
Match datasets to tasks in a defendable way

Input Format

topic: [research topic]
task_system: [task system from Step 2]
paper_count: [number of related papers]
existing_papers: [optional list of related papers]

Workflow

Step 3.1: Extract datasets from existing work

If paper_count >= 5, start from the strongest existing papers.

Read Methods / Data Availability sections and extract:

This is the opening of the README. Read the full README on GitHub.

Commands Bio Dataset Search provides

Slash commands named in this skill’s SKILL.md, listed in the order they first appear.

/bio-dataset-search

Frequently asked about Bio Dataset Search

What else does BioTender-max publish alongside Bio Dataset Search?
Bio Dataset Search is one of 25 skills that DirSkills catalogs from BioTender-max/awesome-bio-agent-skills, the repository it ships in. Its siblings there include ATAC Seq, AlphaFold and BindCraft Binder Design. Each one is a separate skill with its own page in this directory, installs the same way Bio Dataset Search does, and is maintained by BioTender-max in that same repository. The rest of the collection is listed on the BioTender-max/awesome-bio-agent-skills page.
How does Bio Dataset Search compare to other Data skills?
Bio Dataset Search ranks #746 by stars among the 796 Data skills in this catalog. The most-starred ones next to it are Benchmark Methodology, Jupyter Notebook and Solana. DirSkills ranks by the star count of the repository each skill ships in, so that order reflects how popular those repositories are rather than any review of Bio Dataset Search against them. Open each page to compare what they document and how they install.