Documentation
README
Campaign Manager
Goal-oriented design
From goal to pipeline
When user says: "I need 10 good binders for EGFR"
Campaign Planning:
Goal: 10 high-quality binders for EGFR
├── Achievable: Yes (standard target)
├── Recommended pipeline: rfdiffusion → proteinmpnn → colabfold → protein-qc
├── Estimated designs needed: 500 backbones (to get ~50 passing QC)
├── Estimated time: 8-12 hours total
├── Estimated cost: ~$60 (Modal GPU compute)
└── Expected yield:
├── After backbone (500): 500 structures
├── After sequence (×8): 4,000 sequences
├── After validation: 4,000 predictions
├── After QC (~10-15%): 400-600 candidates
└── After clustering: 10-20 diverse final designs
Complete pipeline generator
Standard miniprotein binder campaign
This is the opening of the README. Read the full README on GitHub.